Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs201535452 chr8:6186793 GAA/G 2.25E-5 499 21.85 24.03 7.72 KM Plot
LGG rs201924554 chr1:22126249 CGT/C 1.59E-6 504 21.7 26.27 14.6 KM Plot
LGG rs2050944 chr10:918910 T/C 3.4E-8 505 21.77 24.5 14.15 KM Plot
LGG rs2066317 chr10:520309 C/T 7.68E-5 499 19.13 25.83 21.12 KM Plot
LGG rs209489 chr6:53177678 A/C 5.71E-5 509 22.65 22.73 13.7 KM Plot
LGG rs209492 chr6:53181881 C/T 4.99E-5 509 13.7 23.33 22.47 KM Plot
LGG rs209497 chr6:53185279 A/G 4.99E-5 509 13.7 23.33 22.47 KM Plot
LGG rs209499 chr6:53186203 C/T 4.99E-5 509 13.7 23.33 22.47 KM Plot
LGG rs209501 chr6:53188736 C/T 5.85E-5 509 13.7 23.33 22.47 KM Plot
LGG rs209505 chr6:53192022 C/T 4.99E-5 509 22.47 23.33 13.7 KM Plot
LGG rs209506 chr6:53194545 T/C 5.74E-5 508 13.7 23.8 22.47 KM Plot
LGG rs209514 chr6:53205808 G/A 5.6E-5 509 13.7 23.8 22.37 KM Plot
LGG rs209516 chr6:53206600 C/T 4.99E-5 509 13.7 23.33 22.47 KM Plot
LGG rs209520 chr6:53209842 T/C 4.99E-5 509 13.7 23.33 22.47 KM Plot
LGG rs209523 chr6:53210951 T/C 6.72E-5 508 13.7 22.87 22.47 KM Plot